@TheBlackDragonz: Sorry if I came on a bit strong earlier, just that the number of these kinds of threads I've run into recently have annoyed me. Honestly though, Arceus vs these 3 probably would have been a better fight.
@DBZ_universe: Those were normal humans, and if you think that he could simply paralyse them without encountering any difficulties then you are quite mistaken. The sheer power possessed by the combatants on the team make any of what you suggested very difficult.
@Blacktimus: Because there is a limit to what Mewtwo can do. Naruto, for instance, could probably just break free of Mewtwo's control with a burst of power (if Mewtwo is able to gain a hold at all), and Mewtwo has only demonstrated the ability to negate the powers of lower-level pokemon (who are nowhere near the level of power that Ichigo/Naruto/Luffy are on). And would you care to show me a scan of Mewtwo throwing someone/something into the sun? If so then I may begin to take this battle more seriously.